DatasetSet_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls
#ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls
#ATM_minus_versus_BT_ATM_minus_repos
Phenotypephenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in classBT_ATM_minus
GeneSetNCI_TNF RECEPTOR SIGNALING PATHWAY
Enrichment Score (ES)-0.43086186
Normalized Enrichment Score (NES)-1.8894011
Nominal p-value0.0
FDR q-value0.045886654
FWER p-Value0.289
Table: GSEA Results Summary



Fig 1: Enrichment plot: NCI_TNF RECEPTOR SIGNALING PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MYC1424942_a_at906.1040.0092No
2CEBPB1418901_at 1427844_a_at1295.5560.0196No
3PARP11422502_at 1422503_s_at 1435368_a_at 1443573_at1795.2310.0288No
4ASAH11416735_at3094.5000.0327No
5CYCS1422484_at 1445484_at3114.4900.0424No
6LCK1425396_a_at 1439145_at 1439146_s_at 1457917_at3614.3020.0496No
7BLK1422775_at5483.7860.0493No
8BAX1416837_at5543.7750.0573No
9MAP3K121417115_at 1438908_at 1456565_s_at7323.3650.0565No
10GATA31448886_at8493.1810.0581No
11KPNB11416925_at 1434357_a_at 1448526_at 1451967_x_at8853.1220.0633No
12VIM1438118_x_at 1450641_at 1456292_a_at9653.0240.0663No
13MAP3K71419988_at 1425795_a_at 1426627_at 1449693_at 1455441_at 1458787_at10412.9540.0693No
14ETV11422607_at 1445314_at 1450684_at10542.9440.0752No
15PRKCI1417410_s_at 1448695_at12422.7450.0725No
16CASP81424552_at12772.7000.0769No
17CDK41422441_x_at12892.6910.0822No
18BID1417045_at 1447873_x_at 1448560_at15582.4430.0752No
19RPS6KA51431050_at 1437625_at 1439004_at 1440343_at17792.2790.0701No
20IL2RA1420691_at 1420692_at21052.0770.0596No
21PPARG1420715_a_at21092.0760.0640No
22SFN1448612_at22701.9910.0610No
23ATF11417296_at24361.9250.0576No
24SLC3A21425364_a_at24611.9130.0607No
25UBE2D31423112_at 1423113_a_at 1423114_at 1450858_a_at 1450859_s_at 1455479_a_at 1455480_s_at25901.8640.0588No
26HSPB11422943_a_at 1425964_x_at 1427853_a_at 1427854_x_at 1453914_at27991.7880.0532No
27RFFL1431748_a_at 1434432_at28061.7860.0568No
28FGR1419526_at 1442804_at29921.7230.0520No
29XPO11418442_at 1418443_at 1448070_at30621.7040.0526No
30RAC11423734_at 1437674_at 1451086_s_at31861.6690.0506No
31NRK1436399_s_at 1450078_at 1450079_at32421.6510.0516No
32EIF4EBP11417562_at 1417563_at 1434976_x_at34051.5970.0476No
33LMNB21451849_a_at34551.5830.0488No
34AKT11416657_at 1425711_a_at 1440950_at 1442759_at36871.5110.0415No
35GNB2L11440120_at 1455168_a_at37231.5040.0432No
36LRDD1421397_a_at37451.4960.0455No
37YES11418470_at 1449090_a_at 1456843_at 1458878_at42281.3580.0262No
38IKBKB1426207_at 1426333_a_at 1432275_at 1445141_at 1454184_a_at46791.2390.0082No
39PPARGC1A1434099_at 1434100_x_at 1437751_at 1456395_at 1460336_at48221.2030.0043No
40YWHAG1420816_at 1420817_at 1450012_x_at 1459693_x_at49791.167-0.0004No
41IFNG1425947_at50161.1580.0005No
42MEF2D1421388_at 1434487_at 1436642_x_at 1437300_at 1458901_at50911.143-0.0004No
43SMPD11447874_x_at 1448621_a_at51761.129-0.0018No
44NFKBIA1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at52661.113-0.0035No
45SMPD31422779_at 1438665_at 1445759_at 1450748_at53041.104-0.0028No
46TNF1419607_at53291.099-0.0015No
47MAP3K7IP11426898_at 1447692_x_at53501.096-0.0000No
48RNF1281418318_at 1449036_at55171.062-0.0054No
49RAN1443131_at 1446819_at 1447478_at 1460551_at58401.003-0.0180No
50RALA1423137_at 1450870_at 1456049_at59230.987-0.0196No
51DUSP81418714_at59340.985-0.0179No
52CREBBP1434633_at 1435224_at 1436983_at 1444856_at 1457641_at 1459804_at59990.972-0.0188No
53CHUK1417091_at 1428210_s_at 1451383_a_at62640.932-0.0289No
54YWHAB1420878_a_at 1420879_a_at 1420880_a_at 1436783_x_at 1438708_x_at 1455815_a_at64090.903-0.0336No
55MAPKAPK21426648_at64160.901-0.0319No
56MAP2K11416351_at65720.873-0.0371No
57IGF11419519_at 1436497_at 1437401_at 1452014_a_at67330.843-0.0426No
58RIPK21421236_at 1450173_at67670.837-0.0423No
59DIABLO1417683_at 1425768_at67770.835-0.0409No
60BAD1416582_a_at 1416583_at67940.832-0.0398No
61CASP11449265_at67970.832-0.0381No
62CALM21422414_a_at 1423807_a_at68110.830-0.0369No
63PAWR1444808_at 1445390_at69990.796-0.0438No
64IL31450566_at70200.793-0.0430No
65ERC11421501_a_at 1424247_at 1441493_at 1444356_at 1451279_at71490.772-0.0472No
66HCK1446553_at 1449455_at72390.756-0.0496No
67IRF41421173_at 1421174_at73670.736-0.0539No
68AKAP51447301_at76750.687-0.0665No
69ELK41422233_at 1427162_a_at 1447571_at 1450549_s_at76900.684-0.0657No
70BCL31418133_at78490.658-0.0715No
71MAP2K21415974_at 1443436_at 1460636_at79570.639-0.0751No
72ESR11421244_at 1435663_at 1457877_at 1460591_at79770.634-0.0746No
73MAPKAPK51417016_at 1439828_at81800.604-0.0826No
74PRKCA1427562_a_at 1443069_at 1445028_at 1445395_at 1446598_at 1450945_at82210.595-0.0831No
75PRKG11443663_at 1443811_at 1443812_x_at 1444232_at 1445807_at 1445998_at 1449876_at84180.567-0.0909No
76PRKCZ1418085_at 1449692_at 1454902_at84430.563-0.0908No
77LMNB11423520_at 1423521_at86970.521-0.1013No
78PAK31417923_at 1417924_at 1437318_at87950.506-0.1047No
79DUSP161418401_a_at 1440615_at 1440651_at89410.482-0.1103No
80MAP4K51427083_a_at 1427084_a_at 1427376_a_at 1440059_at 1445426_at 1446348_at 1447204_at90310.469-0.1134No
81EGR41449977_at90460.466-0.1130No
82EGF1418093_a_at90520.465-0.1122No
83PTPRK1423277_at 1423278_at 1431680_a_at 1441276_at 1441277_s_at 1441644_at 1443491_at 1443699_at 1444763_at92500.435-0.1203No
84SRF1418255_s_at 1418256_at93090.428-0.1221No
85NSMAF1416412_at93400.422-0.1225No
86CD40LG1422283_at95460.393-0.1311No
87PIM11423006_at 1435458_at95760.389-0.1316No
88MITF1422025_at 1455214_at95870.387-0.1312No
89MAPK141416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at95890.387-0.1304No
90CASP31426165_a_at 1430192_at 1449839_at96810.373-0.1338No
91PAK21434250_at 1454887_at97700.356-0.1371No
92PTGS21417262_at 1417263_at99720.326-0.1456No
93IL51425546_a_at 1442049_at 1450550_at102590.282-0.1582No
94BCL21422938_at 1427818_at 1437122_at 1440770_at 1443837_x_at 1457687_at105170.241-0.1695No
95PRKCD1422847_a_at 1442256_at106210.228-0.1738No
96FASLG1418803_a_at 1449235_at106380.224-0.1740No
97TP531426538_a_at 1427739_a_at 1438808_at 1457623_x_at 1459780_at 1459781_x_at107700.205-0.1796No
98NFKB11427705_a_at 1442949_at109040.186-0.1854No
99TNFAIP31433699_at 1450829_at109760.174-0.1883No
100MAP4K31444406_at111710.142-0.1969No
101FBXW111425461_at 1425462_at 1437468_x_at 1438336_at 1443010_at 1447294_at 1457485_at111830.140-0.1971No
102PLA2G4A1448558_a_at112560.131-0.2001No
103TH1420546_at113690.113-0.2050No
104TCF31436207_at 1450117_at114070.108-0.2065No
105TRAF61421376_at 1421377_at 1435350_at 1443288_at 1446940_at 1446977_at114350.105-0.2075No
106PTPN11417068_a_at 1438670_at114890.096-0.2098No
107PRKRA1447737_at 1448923_at115030.094-0.2102No
108LIMK11417627_a_at 1425836_a_at 1456234_at 1458989_at116650.066-0.2174No
109CASP41449591_at116700.066-0.2175No
110NFATC21425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at118780.033-0.2269No
111MAPK91421876_at 1421877_at 1421878_at120750.004-0.2360No
112MAPK111421925_at 1421926_at120800.003-0.2361No
113HBP11432143_a_at 1438430_at 1446269_at 1460367_at120830.003-0.2362No
114EIF4E1450909_at 1457489_at 1459371_at12117-0.004-0.2377No
115YWHAE1426384_a_at 1426385_x_at 1435702_s_at 1438839_a_at 1440841_at 1457173_at12203-0.016-0.2416No
116RIPK11419508_at 1439273_at 1449485_at12208-0.017-0.2418No
117LMNA1421654_a_at 1425472_a_at 1426868_x_at 1452212_at 1457670_s_at12432-0.058-0.2519No
118EGR31421486_at 1436329_at12466-0.064-0.2533No
119ATM1421205_at 1428830_at12862-0.132-0.2712No
120CALM11417365_a_at 1417366_s_at 1433592_at 1454611_a_at 1455571_x_at12917-0.142-0.2734No
121CRADD1427505_a_at 1443430_at13107-0.175-0.2818No
122FOSL11417487_at 1417488_at13244-0.198-0.2876No
123ATF21426582_at 1426583_at 1427559_a_at 1437777_at 1452116_s_at 1459237_at13267-0.201-0.2882No
124TNFRSF1B1418099_at 1448951_at13336-0.213-0.2908No
125MAPKAPK31434815_a_at 1437494_at13543-0.247-0.2998No
126PTK21423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at13566-0.252-0.3003No
127PDGFA1418711_at 1449187_at13771-0.289-0.3090No
128NUMA11423974_at 1423975_s_at 1441090_at 1444576_at 1444577_x_at13832-0.297-0.3112No
129PRKCE1437860_at 1437861_s_at 1442609_at 1444649_at 1449956_at 1452878_at13855-0.301-0.3115No
130MAF1435828_at 1437473_at 1444073_at 1447849_s_at 1447945_at 1456060_at13869-0.302-0.3114No
131PRKCH1422079_at 1434248_at13875-0.303-0.3110No
132GSN1415812_at 1436991_x_at 1437171_x_at 1441225_at 1456312_x_at 1456568_at 1456569_x_at14015-0.327-0.3167No
133APP1420621_a_at 1427442_a_at 1438373_at 1438374_x_at 1444705_at 1447347_at 1458525_at14068-0.338-0.3184No
134REL1420710_at14071-0.338-0.3177No
135CAV11449145_a_at14284-0.376-0.3267No
136MKNK11417630_at 1417631_at 1454119_at14424-0.404-0.3322No
137CSF21427429_at14633-0.444-0.3408No
138PRKACA1447720_x_at 1450519_a_at14981-0.518-0.3557No
139POU2F11419716_a_at 1427695_a_at 1427835_at15046-0.533-0.3575No
140MAP2K31425456_a_at 1451714_a_at15187-0.559-0.3627No
141MAP3K81419208_at15282-0.580-0.3658No
142PIK3CA1423144_at 1429434_at 1429435_x_at 1440054_at 1453134_at 1460326_at15477-0.620-0.3734No
143IKBKG1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at15672-0.666-0.3809No
144NUP2141434351_at 1456503_at 1457815_at15760-0.682-0.3834No
145MEF2C1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at15852-0.704-0.3860No
146PAK11420979_at 1420980_at 1450070_s_at 1459029_at15927-0.720-0.3879No
147IL41449864_at15987-0.733-0.3890No
148TNIK1443802_at16180-0.783-0.3961No
149FOS1423100_at16185-0.784-0.3946No
150BCL101418970_a_at 1418971_x_at 1418972_at 1443524_x_at16226-0.792-0.3947No
151ITCH1415769_at 1431316_at 1459332_at16238-0.796-0.3935No
152MAPK81420931_at 1420932_at 1437045_at 1440856_at 1457936_at16585-0.880-0.4075No
153CREB11421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at16714-0.917-0.4114No
154MALT11445068_at 1456126_at 1456429_at16762-0.928-0.4115No
155CFL21418066_at 1418067_at 1431432_at16799-0.935-0.4112No
156TRADD1429117_at 1439910_a_at 1452622_a_at16821-0.940-0.4101No
157RALB1417744_a_at 1435517_x_at16826-0.942-0.4082No
158TOP11423474_at 1438495_at 1457573_at 1459672_at16915-0.960-0.4102No
159MAP3K7IP21423462_at 1451003_at16940-0.965-0.4091No
160MEF2A1421252_a_at 1425426_a_at 1427185_at 1427186_a_at 1452347_at17019-0.982-0.4106No
161DUSP101417163_at 1417164_at17100-1.000-0.4121No
162FKBP1A1416036_at 1438795_x_at 1438958_x_at 1448184_at 1456196_x_at17106-1.000-0.4101No
163YWHAZ1416102_at 1416103_at 1436971_x_at 1436981_a_at 1439005_x_at 1443893_at 1448218_s_at 1448219_a_at17139-1.007-0.4094No
164PIK3R11425514_at 1425515_at 1438682_at 1444591_at 1451737_at17198-1.018-0.4099No
165CSNK1A11424827_a_at 1428537_at 1430529_at 1451497_at 1456216_at17199-1.019-0.4076No
166BAG41418707_at 1439024_at 1449186_at17219-1.023-0.4063No
167SYK1418261_at 1418262_at 1425797_a_at 1457239_at17336-1.044-0.4093No
168ARRB21426239_s_at 1451987_at17449-1.075-0.4122No
169BIRC31421392_a_at 1425223_at17574-1.109-0.4155No
170PRKCQ1426044_a_at17590-1.113-0.4137No
171KSR11419823_s_at 1442581_at 1450114_at17665-1.131-0.4147No
172YWHAH1416004_at17768-1.162-0.4168No
173FYN1417558_at 1441647_at 1448765_at17777-1.164-0.4146No
174GSK3B1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at17944-1.216-0.4196No
175FOXP31420765_a_at 1457082_at18112-1.270-0.4246No
176ATF61435444_at 1453288_at 1456021_at18185-1.293-0.4250No
177CALM31426710_at 1438825_at 1438826_x_at 1450864_at18292-1.328-0.4270No
178DDIT31417516_at 1443897_at18293-1.328-0.4241No
179JUN1417409_at 1448694_at18344-1.347-0.4235No
180APAF11450223_at18376-1.358-0.4220No
181SRC1423240_at 1450918_s_at18385-1.363-0.4193No
182CASP91426125_a_at 1437537_at 1457816_at18419-1.374-0.4179No
183FADD1416888_at 1446499_at18521-1.412-0.4194No
184CYLD1429617_at 1429618_at 1445213_at18770-1.524-0.4275Yes
185SLC9A11417397_at18796-1.538-0.4253Yes
186E2F11417878_at 1431875_a_at 1447840_x_at18822-1.547-0.4231Yes
187GAS21429147_at 1435834_at 1438564_at 1450112_a_at18939-1.599-0.4249Yes
188EP3001434765_at18998-1.622-0.4241Yes
189CASP21448165_at19003-1.624-0.4207Yes
190STAT11420915_at 1440481_at 1450033_a_at 1450034_at19065-1.647-0.4199Yes
191RPS6KA41438243_at 1448498_at19189-1.699-0.4219Yes
192SMPD21416999_at19296-1.755-0.4229Yes
193GZMB1419060_at19425-1.811-0.4249Yes
194USF11426164_a_at 1448805_at 1459758_at19431-1.814-0.4211Yes
195BIRC21418854_at19444-1.821-0.4177Yes
196MAP3K141422999_at 1434364_at19532-1.872-0.4176Yes
197TRAF11423602_at 1445452_at19721-2.020-0.4219Yes
198MAPK11419568_at 1426585_s_at 1442876_at 1453104_at19751-2.036-0.4188Yes
199PRF11451862_a_at19970-2.223-0.4240Yes
200CTLA41419334_at19997-2.246-0.4202Yes
201FKBP81416113_at20126-2.360-0.4210Yes
202CAMK41421941_at 1426167_a_at 1439843_at 1442822_at 1452572_at20147-2.379-0.4167Yes
203NFATC31419976_s_at 1452497_a_at20174-2.397-0.4127Yes
204MAP4K21428297_at 1434833_at 1450244_a_at20211-2.423-0.4090Yes
205DGKA1418578_at20214-2.428-0.4038Yes
206TBX211449361_at20261-2.456-0.4006Yes
207NFKB21425902_a_at 1429128_x_at20604-2.837-0.4101Yes
208MAP3K11424850_at20648-2.888-0.4058Yes
209SPHK21417431_a_at 1426230_at20670-2.915-0.4004Yes
210SQSTM11440076_at 1442237_at 1444021_at 1450957_a_at20674-2.919-0.3942Yes
211CBLB1437304_at 1455082_at 1458469_at20711-2.984-0.3893Yes
212RAB5A1416426_at 1446129_at20790-3.088-0.3861Yes
213RELA1419536_a_at20889-3.265-0.3835Yes
214SREBF11426690_a_at20907-3.287-0.3771Yes
215ACTA11427735_a_at20946-3.379-0.3715Yes
216DFFB1421229_at 1437051_at20947-3.380-0.3641Yes
217YWHAQ1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at20980-3.433-0.3581Yes
218MAPK31427060_at20984-3.442-0.3507Yes
219TSC21452105_a_at21008-3.475-0.3441Yes
220MAP3K31426686_s_at 1426687_at 1436522_at21072-3.604-0.3392Yes
221CTSD1448118_a_at21133-3.728-0.3338Yes
222ARHGDIB1426454_at21139-3.736-0.3258Yes
223MAP4K41422615_at 1440609_at 1448050_s_at 1459912_at21150-3.752-0.3181Yes
224RELB1417856_at21234-3.907-0.3134Yes
225CSNK2A11419034_at 1419035_s_at 1419036_at 1419037_at 1419038_a_at 1453427_at21262-3.988-0.3059Yes
226MAP2K41426233_at 1442679_at 1451982_at21293-4.054-0.2984Yes
227TRAF21451233_at21335-4.141-0.2913Yes
228SATB11416007_at 1416008_at 1439203_at 1439449_at 1443284_at 1456902_at21342-4.159-0.2825Yes
229GDI11447613_at 1451070_at21361-4.221-0.2741Yes
230NR4A11416505_at21376-4.260-0.2654Yes
231MADD1425735_at 1455502_at21387-4.284-0.2565Yes
232RAF11416078_s_at 1425419_a_at21451-4.510-0.2495Yes
233CDC25B1421963_a_at21548-4.910-0.2432Yes
234MAP2K61426850_a_at 1459292_at21619-5.264-0.2349Yes
235ADAM171421857_at 1421858_at 1421859_at 1445500_at21765-6.521-0.2274Yes
236JUNB1415899_at21777-6.806-0.2130Yes
237EGR11417065_at21803-7.184-0.1984Yes
238DUSP11448830_at21821-7.570-0.1827Yes
239TNFRSF1A1417291_at21839-8.146-0.1656Yes
240EGR21427682_a_at 1427683_at21881-9.155-0.1475Yes
241CASP71426062_a_at 1448659_at21883-9.234-0.1274Yes
242LSP11417756_a_at21884-9.285-0.1071Yes
243CASP61415995_at 1458715_at21892-9.592-0.0864Yes
244CCM21434648_a_at 1434649_at 1456290_x_at 1457339_at21900-9.951-0.0650Yes
245MAP2K71421416_at 1425393_a_at 1425512_at 1425513_at 1440442_at 1451736_a_at 1457182_at21902-9.953-0.0433Yes
246DFFA1450885_at 1457564_at21915-10.213-0.0215Yes
247NFATC11417621_at 1425761_a_at 1428479_at 1447084_at 1447085_s_at21917-10.2210.0008Yes
Table: GSEA details [plain text format]



Fig 2: NCI_TNF RECEPTOR SIGNALING PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: NCI_TNF RECEPTOR SIGNALING PATHWAY: Random ES distribution   
Gene set null distribution of ES for NCI_TNF RECEPTOR SIGNALING PATHWAY